





abi2link is designed to create linkage files out of ABI genotype and phenotype files. Please see example directory for a detailed file description.
Currently known arguments:
| --map <haldane|kosambi> | locus mapping function |
| --ped <file> | pedigree file |
| --chr <file> | chromosome description file |
| --trait <file> | trait file (optional) |
| --estimate <all|founder> | estimate allele frequencies from all individuals or from founders only (optional, default: all) |
| --prefix <name> | output file prefix (optional, default: abi2link) |
| -v, --version | print version information and exit |
| -h, --help | print this text and exit |
Copyright: Andreas Ziegler
Contact: ziegler@imbs.uni-luebeck.de

