abi2link

abi2link is designed to create linkage files out of ABI genotype and phenotype files. Please see example directory for a detailed file description.

Usage:/abi2link ARGUMENTS

Currently known arguments:

 

--map <haldane|kosambi> locus mapping function
--ped <file> pedigree file
--chr <file> chromosome description file
--trait <file> trait file (optional)
--estimate <all|founder> estimate allele frequencies from all individuals or from founders only (optional, default: all)
--prefix <name> output file prefix (optional, default: abi2link)
-v, --version print version information and exit
-h, --help print this text and exit

Copyright: Andreas Ziegler

Contact: ziegler@imbs.uni-luebeck.de

abi2link

abilink - User Documentation